Detailed information of SNP:
|
SNP ID:
sf1201520385(Gbrowse)
Chromosome: chr12 Position: 1520385 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 50.25% | 49.75% |
| All Indica | 799 | 86.98% | 13.02% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 86.93% | 13.07% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 26.19% | 73.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201520385 | C->T | LOC_Os12g03750(LOC_Os12g03750.1) | INTRON |