Detailed information of SNP:
|
SNP ID:
sf1201534323(Gbrowse)
Chromosome: chr12 Position: 1534323 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1370 | 54.82% | 45.18% |
| All Indica | 750 | 19.73% | 80.27% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 345 | 20.87% | 79.13% |
| Indica II | 205 | 11.71% | 88.29% |
| Indica Intermediate | 200 | 26.00% | 74.00% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201534323 | C->T | LOC_Os12g03770(LOC_Os12g03770.1) | INTRON |