Detailed information of SNP:
|
SNP ID:
sf1201534604(Gbrowse)
Chromosome: chr12 Position: 1534604 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1342 | 54.02% | 45.98% |
| All Indica | 723 | 88.66% | 11.34% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 337 | 88.43% | 11.57% |
| Indica II | 207 | 88.89% | 11.11% |
| Indica Intermediate | 179 | 88.83% | 11.17% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 34.15% | 65.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201534604 | A->G | LOC_Os12g03770(LOC_Os12g03770.1) | Synonymous |