Detailed information of SNP:
|
SNP ID:
sf1201544939(Gbrowse)
Chromosome: chr12 Position: 1544939 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 60.99% | 39.01% |
| All Indica | 797 | 97.37% | 2.63% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 209 | 98.56% | 1.44% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201544939 | T->C | LOC_Os12g03790(LOC_Os12g03790.1) | INTRON |