Detailed information of SNP:
|
SNP ID:
sf1201577984(Gbrowse)
Chromosome: chr12 Position: 1577984 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 55.72% | 44.28% |
| All Indica | 796 | 88.57% | 11.43% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 372 | 89.25% | 10.75% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201577984 | G->A | INTERGENIC | None |