Detailed information of SNP:
|
SNP ID:
sf1201578161(Gbrowse)
Chromosome: chr12 Position: 1578161 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 54.53% | 45.47% |
| All Indica | 795 | 94.34% | 5.66% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 66 | 1.52% | 98.48% |
| Indica I | 374 | 95.99% | 4.01% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201578161 | C->T | INTERGENIC | None |