Detailed information of SNP:
|
SNP ID:
sf1201613837(Gbrowse)
Chromosome: chr12 Position: 1613837 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 56.45% | 43.55% |
| All Indica | 799 | 96.12% | 3.88% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201613837 | G->A | LOC_Os12g03899(LOC_Os12g03899.1) | INTRON |
| sf1201613837 | G->A | LOC_Os12g03899(LOC_Os12g03899.4) | INTRON |