Detailed information of SNP:
|
SNP ID:
sf1201624779(Gbrowse)
Chromosome: chr12 Position: 1624779 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 56.31% | 43.69% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201624779 | C->T | LOC_Os12g03920(LOC_Os12g03920.1) | Non-Synonymous SNP |