Detailed information of SNP:
|
SNP ID:
sf1201651415(Gbrowse)
Chromosome: chr12 Position: 1651415 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 57.40% | 42.60% |
| All Indica | 798 | 97.62% | 2.38% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201651415 | A->C | INTERGENIC | None |