Detailed information of SNP:
|
SNP ID:
sf1201690995(Gbrowse)
Chromosome: chr12 Position: 1690995 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1358 | 60.53% | 39.47% |
| All Indica | 794 | 98.87% | 1.13% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 15 | 86.67% | 13.33% |
| Indica I | 372 | 100.00% | 0.00% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 209 | 98.56% | 1.44% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 39 | 41.03% | 58.97% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201690995 | A->G | INTERGENIC | None |