Detailed information of SNP:
|
SNP ID:
sf1201734908(Gbrowse)
Chromosome: chr12 Position: 1734908 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 56.73% | 43.27% |
| All Indica | 799 | 96.62% | 3.38% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201734908 | C->T | INTERGENIC | None |