Detailed information of SNP:
|
SNP ID:
sf1201738892(Gbrowse)
Chromosome: chr12 Position: 1738892 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 52.35% | 47.65% |
| All Indica | 782 | 88.36% | 11.64% |
| All Japonica | 480 | 1.67% | 98.33% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 367 | 88.83% | 11.17% |
| Indica II | 210 | 92.38% | 7.62% |
| Indica Intermediate | 205 | 83.41% | 16.59% |
| Temperate Japonica | 325 | 1.54% | 98.46% |
| Tropical Japonica | 87 | 3.45% | 96.55% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 35.00% | 65.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201738892 | T->C | LOC_Os12g04140(LOC_Os12g04140.1) | Non-Synonymous SNP |