Detailed information of SNP:
|
SNP ID:
sf1201778592(Gbrowse)
Chromosome: chr12 Position: 1778592 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 95.90% | 4.10% |
| All Indica | 779 | 93.97% | 6.03% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 60 | 85.00% | 15.00% |
| Indica I | 370 | 99.73% | 0.27% |
| Indica II | 204 | 83.33% | 16.67% |
| Indica Intermediate | 205 | 94.15% | 5.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201778592 | C->A | INTERGENIC | None |