Detailed information of SNP:
|
SNP ID:
sf1201803342(Gbrowse)
Chromosome: chr12 Position: 1803342 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 52.08% | 47.92% |
| All Indica | 799 | 88.86% | 11.14% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 87.73% | 12.27% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201803342 | G->T | LOC_Os12g04260(LOC_Os12g04260.1) | Non-Synonymous SNP |