Detailed information of SNP:
|
SNP ID:
sf1201809309(Gbrowse)
Chromosome: chr12 Position: 1809309 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 56.94% | 43.06% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201809309 | A->G | LOC_Os12g04270(LOC_Os12g04270.1) | INTRON |
| sf1201809309 | A->G | LOC_Os12g04270(LOC_Os12g04270.2) | INTRON |