Detailed information of SNP:



SNP ID: sf1201866676(Gbrowse)

Chromosome: chr12

Position: 1866676
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 97.95% 2.05%
All Indica799 99.62% 0.38%
All Japonica496 94.96% 5.04%
Aus67 100.00% 0.00%
Indica I375 99.47% 0.53%
Indica II213 100.00% 0.00%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica334 99.40% 0.60%
Tropical Japonica94 92.55% 7.45%
Japonica Intermediate68 76.47% 23.53%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1201866676 C->T LOC_Os12g04400(LOC_Os12g04400.1) INTRON