Detailed information of SNP:
SNP ID:
sf1201875122(Gbrowse)
Chromosome: chr12 Position: 1875122 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1415 | 55.12% | 44.88% |
All Indica | 796 | 94.85% | 5.15% |
All Japonica | 497 | 1.21% | 98.79% |
Aus | 67 | 5.97% | 94.03% |
Indica I | 374 | 95.99% | 4.01% |
Indica II | 211 | 94.31% | 5.69% |
Indica Intermediate | 211 | 93.36% | 6.64% |
Temperate Japonica | 335 | 1.19% | 98.81% |
Tropical Japonica | 94 | 2.13% | 97.87% |
Japonica Intermediate | 68 | 0.00% | 100.00% |
Group VI/Aromatic | 14 | 0.00% | 100.00% |
Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1201875122 | G->A | INTERGENIC | None |