Detailed information of SNP:
|
SNP ID:
sf1201898561(Gbrowse)
Chromosome: chr12 Position: 1898561 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 55.78% | 44.22% |
| All Indica | 798 | 96.24% | 3.76% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201898561 | G->A | INTERGENIC | None |