Detailed information of SNP:
|
SNP ID:
sf1201902907(Gbrowse)
Chromosome: chr12 Position: 1902907 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1340 | 77.24% | 22.76% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 420 | 31.67% | 68.33% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 280 | 27.50% | 72.50% |
| Tropical Japonica | 84 | 25.00% | 75.00% |
| Japonica Intermediate | 56 | 62.50% | 37.50% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201902907 | A->G | INTERGENIC | None |