Detailed information of SNP:
|
SNP ID:
sf1201929766(Gbrowse)
Chromosome: chr12 Position: 1929766 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 55.81% | 44.19% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201929766 | G->A | LOC_Os12g04540(LOC_Os12g04540.1) | Synonymous |