Detailed information of SNP:
|
SNP ID:
sf1201960603(Gbrowse)
Chromosome: chr12 Position: 1960603 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 57.35% | 42.65% |
| All Indica | 786 | 96.95% | 3.05% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 64 | 23.44% | 76.56% |
| Indica I | 369 | 98.37% | 1.63% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 207 | 95.17% | 4.83% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201960603 | T->C | INTERGENIC | None |