Detailed information of SNP:
SNP ID:
sf1201962099(Gbrowse)
Chromosome: chr12 Position: 1962099 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1418 | 54.09% | 45.91% |
All Indica | 798 | 93.11% | 6.89% |
All Japonica | 497 | 1.41% | 98.59% |
Aus | 67 | 4.48% | 95.52% |
Indica I | 375 | 95.20% | 4.80% |
Indica II | 213 | 92.02% | 7.98% |
Indica Intermediate | 210 | 90.48% | 9.52% |
Temperate Japonica | 335 | 1.49% | 98.51% |
Tropical Japonica | 94 | 2.13% | 97.87% |
Japonica Intermediate | 68 | 0.00% | 100.00% |
Group VI/Aromatic | 14 | 0.00% | 100.00% |
Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1201962099 | A->G | INTERGENIC | None |