Detailed information of SNP:
|
SNP ID:
sf1201998519(Gbrowse)
Chromosome: chr12 Position: 1998519 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1200 | 86.25% | 13.75% |
| All Indica | 797 | 99.62% | 0.38% |
| All Japonica | 289 | 46.02% | 53.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 192 | 36.46% | 63.54% |
| Tropical Japonica | 55 | 54.55% | 45.45% |
| Japonica Intermediate | 42 | 78.57% | 21.43% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 33 | 81.82% | 18.18% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201998519 | A->G | INTERGENIC | None |