Detailed information of SNP:
|
SNP ID:
sf1202004431(Gbrowse)
Chromosome: chr12 Position: 2004431 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 55.99% | 44.01% |
| All Indica | 798 | 96.24% | 3.76% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 374 | 95.99% | 4.01% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202004431 | T->A | INTERGENIC | None |