Detailed information of SNP:
|
SNP ID:
sf1202005999(Gbrowse)
Chromosome: chr12 Position: 2005999 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 64.63% | 35.37% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 474 | 3.80% | 96.20% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 318 | 3.14% | 96.86% |
| Tropical Japonica | 90 | 6.67% | 93.33% |
| Japonica Intermediate | 66 | 3.03% | 96.97% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202005999 | A->G | INTERGENIC | None |