Detailed information of SNP:
|
SNP ID:
sf1202008956(Gbrowse)
Chromosome: chr12 Position: 2008956 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 93.09% | 6.91% |
| All Indica | 799 | 96.25% | 3.75% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202008956 | G->A | INTERGENIC | None |