Detailed information of SNP:



SNP ID: sf1202045440(Gbrowse)

Chromosome: chr12

Position: 2045440
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1418 94.71% 5.29%
All Indica798 98.25% 1.75%
All Japonica497 100.00% 0.00%
Aus67 19.40% 80.60%
Indica I375 98.67% 1.33%
Indica II212 99.53% 0.47%
Indica Intermediate211 96.21% 3.79%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 85.71% 14.29%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1202045440 G->A INTERGENIC None