Detailed information of SNP:
|
SNP ID:
sf1202046030(Gbrowse)
Chromosome: chr12 Position: 2046030 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1357 | 87.62% | 12.38% |
| All Indica | 760 | 96.84% | 3.16% |
| All Japonica | 474 | 85.86% | 14.14% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 349 | 97.42% | 2.58% |
| Indica II | 208 | 98.08% | 1.92% |
| Indica Intermediate | 203 | 94.58% | 5.42% |
| Temperate Japonica | 318 | 88.36% | 11.64% |
| Tropical Japonica | 92 | 92.39% | 7.61% |
| Japonica Intermediate | 64 | 64.06% | 35.94% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202046030 | G->C | LOC_Os12g04800(LOC_Os12g04800.1) | INTRON |