Detailed information of SNP:
|
SNP ID:
sf1202060887(Gbrowse)
Chromosome: chr12 Position: 2060887 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 91.54% | 8.46% |
| All Indica | 775 | 85.29% | 14.71% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 95.39% | 4.61% |
| Indica II | 201 | 64.18% | 35.82% |
| Indica Intermediate | 205 | 87.80% | 12.20% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202060887 | C->T | LOC_Os12g04820(LOC_Os12g04820.1) | Synonymous |