Detailed information of SNP:
|
SNP ID:
sf1202069342(Gbrowse)
Chromosome: chr12 Position: 2069342 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 80.60% | 19.40% |
| All Indica | 773 | 65.33% | 34.67% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 359 | 73.54% | 26.46% |
| Indica II | 210 | 56.19% | 43.81% |
| Indica Intermediate | 204 | 60.29% | 39.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202069342 | G->A | LOC_Os12g04830(LOC_Os12g04830.1) | INTRON |