Detailed information of SNP:
|
SNP ID:
sf1202072186(Gbrowse)
Chromosome: chr12 Position: 2072186 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1362 | 86.71% | 13.29% |
| All Indica | 744 | 75.94% | 24.06% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 352 | 84.09% | 15.91% |
| Indica II | 206 | 67.96% | 32.04% |
| Indica Intermediate | 186 | 69.35% | 30.65% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202072186 | G->A | LOC_Os12g04830(LOC_Os12g04830.1) | Non-Synonymous SNP |