Detailed information of SNP:
|
SNP ID:
sf1202092387(Gbrowse)
Chromosome: chr12 Position: 2092387 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1365 | 96.92% | 3.08% |
| All Indica | 782 | 95.52% | 4.48% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 35 | 91.43% | 8.57% |
| Indica I | 367 | 93.19% | 6.81% |
| Indica II | 210 | 98.57% | 1.43% |
| Indica Intermediate | 205 | 96.59% | 3.41% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202092387 | G->C | INTERGENIC | None |