Detailed information of SNP:
|
SNP ID:
sf1202101383(Gbrowse)
Chromosome: chr12 Position: 2101383 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 53.50% | 46.50% |
| All Indica | 781 | 18.69% | 81.31% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 364 | 20.60% | 79.40% |
| Indica II | 207 | 9.18% | 90.82% |
| Indica Intermediate | 210 | 24.76% | 75.24% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202101383 | A->G | LOC_Os12g04890(LOC_Os12g04890.1) | Non-Synonymous SNP |