Detailed information of SNP:
|
SNP ID:
sf1202101392(Gbrowse)
Chromosome: chr12 Position: 2101392 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 54.50% | 45.50% |
| All Indica | 781 | 20.36% | 79.64% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 365 | 22.19% | 77.81% |
| Indica II | 208 | 10.10% | 89.90% |
| Indica Intermediate | 208 | 27.40% | 72.60% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202101392 | C->T | LOC_Os12g04890(LOC_Os12g04890.1) | Non-Synonymous SNP |