Detailed information of SNP:
|
SNP ID:
sf1202106186(Gbrowse)
Chromosome: chr12 Position: 2106186 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 76.55% | 23.45% |
| All Indica | 780 | 58.85% | 41.15% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 41.80% | 58.20% |
| Indica II | 207 | 74.40% | 25.60% |
| Indica Intermediate | 207 | 73.43% | 26.57% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202106186 | T->A | INTERGENIC | None |