Detailed information of SNP:
|
SNP ID:
sf1202106574(Gbrowse)
Chromosome: chr12 Position: 2106574 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 95.01% | 4.99% |
| All Indica | 764 | 92.28% | 7.72% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 99.19% | 0.81% |
| Indica II | 196 | 81.63% | 18.37% |
| Indica Intermediate | 199 | 89.95% | 10.05% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202106574 | C->T | LOC_Os12g04900(LOC_Os12g04900.1) | Synonymous |