Detailed information of SNP:
|
SNP ID:
sf1202106649(Gbrowse)
Chromosome: chr12 Position: 2106649 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 75.02% | 24.98% |
| All Indica | 769 | 55.66% | 44.34% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 360 | 38.06% | 61.94% |
| Indica II | 203 | 71.92% | 28.08% |
| Indica Intermediate | 206 | 70.39% | 29.61% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202106649 | C->A | LOC_Os12g04900(LOC_Os12g04900.1) | Non-Synonymous SNP |