Detailed information of SNP:
|
SNP ID:
sf1202106666(Gbrowse)
Chromosome: chr12 Position: 2106666 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 76.82% | 23.18% |
| All Indica | 778 | 59.00% | 41.00% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 42.03% | 57.97% |
| Indica II | 208 | 75.48% | 24.52% |
| Indica Intermediate | 206 | 72.33% | 27.67% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202106666 | G->A | LOC_Os12g04900(LOC_Os12g04900.1) | Non-Synonymous SNP |