Detailed information of SNP:
|
SNP ID:
sf1202107839(Gbrowse)
Chromosome: chr12 Position: 2107839 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1332 | 90.84% | 9.16% |
| All Indica | 717 | 93.31% | 6.69% |
| All Japonica | 494 | 99.19% | 0.81% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 319 | 94.98% | 5.02% |
| Indica II | 205 | 93.17% | 6.83% |
| Indica Intermediate | 193 | 90.67% | 9.33% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202107839 | T->C | LOC_Os12g04910(LOC_Os12g04910.1) | Non-Synonymous SNP |