Detailed information of SNP:
|
SNP ID:
sf1202107889(Gbrowse)
Chromosome: chr12 Position: 2107889 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 88.55% | 11.45% |
| All Indica | 778 | 89.20% | 10.80% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 366 | 86.89% | 13.11% |
| Indica II | 204 | 90.69% | 9.31% |
| Indica Intermediate | 208 | 91.83% | 8.17% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202107889 | T->C | LOC_Os12g04910(LOC_Os12g04910.1) | Synonymous |