Detailed information of SNP:
|
SNP ID:
sf1202108315(Gbrowse)
Chromosome: chr12 Position: 2108315 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1296 | 89.35% | 10.65% |
| All Indica | 683 | 91.36% | 8.64% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 359 | 94.99% | 5.01% |
| Indica II | 144 | 81.25% | 18.75% |
| Indica Intermediate | 180 | 92.22% | 7.78% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202108315 | G->A | LOC_Os12g04910(LOC_Os12g04910.1) | Non-Synonymous SNP |