Detailed information of SNP:
|
SNP ID:
sf1202109383(Gbrowse)
Chromosome: chr12 Position: 2109383 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 96.27% | 3.73% |
| All Indica | 779 | 95.12% | 4.88% |
| All Japonica | 495 | 97.58% | 2.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 99.73% | 0.27% |
| Indica II | 201 | 89.05% | 10.95% |
| Indica Intermediate | 207 | 92.75% | 7.25% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 89.13% | 10.87% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202109383 | C->T | LOC_Os12g04910(LOC_Os12g04910.1) | Non-Synonymous SNP |