Detailed information of SNP:
|
SNP ID:
sf1202110174(Gbrowse)
Chromosome: chr12 Position: 2110174 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 58.90% | 41.10% |
| All Indica | 778 | 91.52% | 8.48% |
| All Japonica | 495 | 4.44% | 95.56% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 366 | 90.98% | 9.02% |
| Indica II | 207 | 91.30% | 8.70% |
| Indica Intermediate | 205 | 92.68% | 7.32% |
| Temperate Japonica | 333 | 1.20% | 98.80% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202110174 | A->G | LOC_Os12g04910(LOC_Os12g04910.1) | Non-Synonymous SNP |