Detailed information of SNP:
|
SNP ID:
sf1202158595(Gbrowse)
Chromosome: chr12 Position: 2158595 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 94.71% | 5.29% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202158595 | A->G | INTERGENIC | None |