Detailed information of SNP:
|
SNP ID:
sf1202198833(Gbrowse)
Chromosome: chr12 Position: 2198833 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1226 | 97.15% | 2.85% |
| All Indica | 608 | 94.57% | 5.43% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 247 | 93.52% | 6.48% |
| Indica II | 201 | 97.01% | 2.99% |
| Indica Intermediate | 160 | 93.12% | 6.87% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202198833 | A->C | INTERGENIC | None |