Detailed information of SNP:
|
SNP ID:
sf1202257122(Gbrowse)
Chromosome: chr12 Position: 2257122 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 61.40% | 38.60% |
| All Indica | 798 | 97.99% | 2.01% |
| All Japonica | 496 | 1.61% | 98.39% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202257122 | G->A | INTERGENIC | None |