Detailed information of SNP:
|
SNP ID:
sf1202274914(Gbrowse)
Chromosome: chr12 Position: 2274914 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 94.84% | 5.16% |
| All Indica | 798 | 97.74% | 2.26% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 23.44% | 76.56% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202274914 | G->A | INTERGENIC | None |