Detailed information of SNP:
|
SNP ID:
sf1202281857(Gbrowse)
Chromosome: chr12 Position: 2281857 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 94.21% | 5.79% |
| All Indica | 798 | 97.24% | 2.76% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 19.70% | 80.30% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202281857 | G->A | INTERGENIC | None |