Detailed information of SNP:
|
SNP ID:
sf1202397700(Gbrowse)
Chromosome: chr12 Position: 2397700 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 62.34% | 37.66% |
| All Indica | 790 | 98.10% | 1.90% |
| All Japonica | 496 | 5.24% | 94.76% |
| Aus | 49 | 91.84% | 8.16% |
| Indica I | 371 | 98.65% | 1.35% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 208 | 98.08% | 1.92% |
| Temperate Japonica | 334 | 5.09% | 94.91% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 38 | 47.37% | 52.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202397700 | A->G | INTERGENIC | None |