Detailed information of SNP:
|
SNP ID:
sf1202403268(Gbrowse)
Chromosome: chr12 Position: 2403268 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 57.27% | 42.73% |
| All Indica | 798 | 93.98% | 6.02% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 37.50% | 62.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1202403268 | G->A | INTERGENIC | None |